RNFtools manual¶
This is the manual of RNFtools which is an associate software package for Read Naming Format (RNF), a generic format for naming simulated Next-Generation Sequencing reads.
RNFtools can be used for simulation of NGS reads, evaluation of mappers, and conversion of RNF-compliant data.
Publication
- Břinda, V. Boeva, G. Kucherov. RNF: a general framework to evaluate NGS read mappers. Bioinformatics 32(1), pp. 136-139, 2016. [doi:10.1093/bioinformatics/btv524]
Links¶
Project webpage - RNF specification - GitHub repository - Bug reporting - Mailing list - Contact
Table of contents¶
- Introduction
- Introduction to RNFtools.
- Tutorials
- Tutorials demonstrating installation and basic usage of RNFtools.
- Reference
- Automatically generated documentation for RNFtools (including CLI variant
rnftools
). - Additional information
- FAQs, supplementary information about RNFtools, information about state-of-the-art read simulators.